MolNFT v1 · #75319 · protein
The structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution
3PMO · Udp-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase: “The structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.29). MolNFT v1 #75319 on…
- PDB
- 3PMO
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Udp-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
- EC
- 2.3.1.-
- UniProt
- Q9HXY6
- Ligands
- CL
- Pockets
- 2 · best druggability 0.29
Structure
x-ray diffraction · 1 distinct chain · 18% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Udp-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) | protein | 357 | 18% helix, 29% strand | Q9HXY6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 62 | 0.29 | 0.74 | 15 | empty |
| 2 | 56 | 0.28 | 0.74 | 15 | empty |
Compared structures
- 3PMO · The structure of LpxD from Pseudomonas aeruginosa at 1.3 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HXY6 · AlphaFold monomer V2.0 prediction for udp-3-O-acylglucosamine N-acyltransferase (Q9HXY6) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HXY6
- Elsewhere: RCSB PDB 3PMO · PDBe 3PMO · UniProt Q9HXY6
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