MolNFT v1 · #75224 · protein
Structure of pseudomonas fluorescence lapd ggdef-eal dual domain, P32
3PJX · Cyclic dimeric gmp binding protein: “Structure of pseudomonas fluorescence lapd ggdef-eal dual domain, P32”. X-ray diffraction, 3 pockets (best druggability 0.84). MolNFT v1 #75224 on GenesisL1: 3D structure, binding sites and…
- PDB
- 3PJX
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic dimeric gmp binding protein
- UniProt
- Q3KK31
- Pockets
- 3 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclic dimeric gmp binding protein | protein | 423 | 50% helix, 21% strand | Q3KK31 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 668 | 0.84 | 0.88 | 67 | empty |
| 2 | 190 | 0.49 | 0.76 | 30 | EDO |
| 3 | 100 | 0.38 | 0.76 | 20 | empty |
Compared structures
- 3PJX · Structure of Pseudomonas fluorescence LapD GGDEF-EAL dual domain, P32 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KK31
- Elsewhere: RCSB PDB 3PJX · PDBe 3PJX · UniProt Q3KK31
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