MolNFT v1 · #75222 · protein
Structure of pseudomonas fluorescence lapd periplasmic domain
3PJV · Cyclic dimeric gmp binding protein: “Structure of pseudomonas fluorescence lapd periplasmic domain”. X-ray diffraction, 3 pockets (best druggability 0.45). MolNFT v1 #75222 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3PJV
- Type
- protein
- Length
- 255 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic dimeric gmp binding protein
- UniProt
- Q3KK31
- Pockets
- 3 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 25% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | Cyclic dimeric gmp binding protein | protein | 128 | 48% helix, 24% strand | Q3KK31 |
| F | Cyclic dimeric gmp binding protein | protein | 127 | 48% helix, 27% strand | Q3KK31 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 81 | 0.45 | 0.81 | 19 | empty |
| 2 | 145 | 0.40 | 0.74 | 22 | empty |
| 3 | 61 | 0.31 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- D–F · 3556 Ų buried · 53 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 3PJV · Structure of Pseudomonas fluorescence LapD periplasmic domain · the same entry in another collection · chain D against D, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3KK31
- Elsewhere: RCSB PDB 3PJV · PDBe 3PJV · UniProt Q3KK31
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