MolNFT v1 · #75138 · protein

Crystal structure of human HDAC6 in complex with ubiquitin

3PHD: “Crystal structure of human HDAC6 in complex with ubiquitin”. X-ray diffraction. MolNFT v1 #75138 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3PHD
Type: protein
Length: 469 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: Q9UBN7, P62988

Structure

x-ray diffraction · 8 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	102	—	Q9UBN7
B	—	protein	100	—	Q9UBN7
C	—	protein	85	—	Q9UBN7
D	—	protein	84	—	Q9UBN7
E	—	protein	14	—	P62988
F	—	protein	5	—	P62988
G	—	protein	40	—	P62988
H	—	protein	39	—	P62988

Compared structures

3PHD · Crystal structure of human HDAC6 in complex with ubiquitin · the same entry in another collection · chain C against C, TM-score 1.00
Q9UBN7 · AlphaFold monomer V2.0 prediction for histone deacetylase 6 (Q9UBN7) · a predicted model of the same protein · chain B against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UBN7
Every structure of UniProt P62988
Elsewhere: RCSB PDB 3PHD · PDBe 3PHD · UniProt Q9UBN7 · UniProt P62988

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