MolNFT v1 · #75125 · protein

Crystal structure of a single strand binding protein (ssb) from bartonella henselae

3PGZ · Single-stranded DNA-binding protein: “Crystal structure of a single strand binding protein (ssb) from bartonella henselae”. X-ray diffraction, 1 ligand (UNX), 3 pockets (best druggability 0.51). MolNFT v1 #75125 on GenesisL1: 3D…

PDB: 3PGZ
Type: protein
Length: 223 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Single-stranded DNA-binding protein
UniProt: Q6G302
Ligands: UNX
Pockets: 3 · best druggability 0.51

Structure

x-ray diffraction · 2 distinct chains · 9% helix, 59% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Single-stranded DNA-binding protein	protein	109	9% helix, 60% strand	Q6G302
B	Single-stranded DNA-binding protein	protein	114	9% helix, 59% strand	Q6G302

Ligands and binding sites

UNX · Unknown atom or ion · ion · 6 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	161	0.51	0.79	31	empty
2	132	0.40	0.74	17	empty
3	55	0.36	0.79	18	empty

Interfaces

1 interface between chains.

A–B · 1312 Å² buried · 31 hydrogen bonds · protein-protein

Compared structures

3PGZ · Crystal structure of a single strand binding protein (SSB) from bartonella henselae · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6G302
Elsewhere: RCSB PDB 3PGZ · PDBe 3PGZ · UniProt Q6G302

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