MolNFT v1 · #75108 · protein
Crystal structure of cryptosporidium parvum U6 snrna-associated sm- like protein LSM5
3PGG · U6 snrna-associated sm-like protein LSM5. sm domain: “Crystal structure of cryptosporidium parvum U6 snrna-associated sm- like protein LSM5”. X-ray diffraction, 1 pocket (best druggability 0.45). MolNFT v1 #75108 on GenesisL1: 3D…
- PDB
- 3PGG
- Type
- protein
- Length
- 158 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- U6 snrna-associated sm-like protein LSM5. sm domain
- UniProt
- Q5CXX3
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 13% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | U6 snrna-associated sm-like protein LSM5. sm domain | protein | 78 | 13% helix, 54% strand | Q5CXX3 |
| B | U6 snrna-associated sm-like protein LSM5. sm domain | protein | 80 | 13% helix, 55% strand | Q5CXX3 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 133 | 0.45 | 0.76 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 768 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
- 3PGG · Crystal structure of cryptosporidium parvum u6 snrna-associated sm-like protein lsm5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5CXX3
- Elsewhere: RCSB PDB 3PGG · PDBe 3PGG · UniProt Q5CXX3
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