MolNFT v1 · #75096 · protein
The crystal structure of new delhi metallo-beta lactamase (ndm-1)
3PG4 · Metallo-beta-lactamase: “The crystal structure of new delhi metallo-beta lactamase (ndm-1)”. X-ray diffraction, 1 pocket (best druggability 0.41). MolNFT v1 #75096 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3PG4
- Type
- protein
- Length
- 230 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Metallo-beta-lactamase
- EC
- 3.5.2.6
- UniProt
- C7C422
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Metallo-beta-lactamase (EC 3.5.2.6) | protein | 230 | 28% helix, 30% strand | C7C422 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 136 | 0.41 | 0.75 | 25 | empty |
Compared structures
- 3PG4 · The crystal structure of New Delhi Metallo-beta lactamase (NDM-1) · the same entry in another collection · chain A against A, TM-score 1.00
- C7C422 · AlphaFold monomer V2.0 prediction for metallo-beta-lactamase type 2 (C7C422) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C7C422
- Elsewhere: RCSB PDB 3PG4 · PDBe 3PG4 · UniProt C7C422
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