MolNFT v1 · #7506 · DNA

Molecular and crystal structure of D(CGCGAATF5UCGCG):5- formyluridine/ adenosine base-pairs in B-DNA

1G8N · 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3': “Molecular and crystal structure of D(CGCGAATF5UCGCG):5- formyluridine/ adenosine base-pairs in B-DNA”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #7506 on GenesisL1: 3D structure…

PDB: 1G8N
Type: DNA
Length: 24 nucleotides
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 5'-D(*CP*GP*CP*GP*AP*AP*TP*(UFR)P*CP*GP*CP*G)-3'
Ligands: MG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	5'-D(CPGPCPGPAPAPTP(UFR)PCPGPCPG)-3'	dna	12	—	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 565 Å² buried · 49 hydrogen bonds · nucleic-nucleic

Modifications

Observed in the structure: 2 modified (nucleotide modification).

Compared structures

1G8N · Molecular and crystal structure of D(CGCGAATF5UCGCG):5-formyluridine/ adenosine… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 1G8N · PDBe 1G8N

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