MolNFT v1 · #75051 · protein
Crystal structure of uncharacterized protein from pseudomonas phage yua
3PES · Uncharacterized protein GP49: “Crystal structure of uncharacterized protein from pseudomonas phage yua”. X-ray diffraction, 3 pockets (best druggability 0.44). MolNFT v1 #75051 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 3PES
- Type
- protein
- Length
- 165 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein GP49
- UniProt
- A9J573
- Pockets
- 3 · best druggability 0.44
Structure
x-ray diffraction · 2 distinct chains · 27% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein GP49 | protein | 83 | 27% helix, 36% strand | A9J573 |
| B | Uncharacterized protein GP49 | protein | 82 | 27% helix, 37% strand | A9J573 |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 150 | 0.44 | 0.75 | 26 | empty |
| 2 | 54 | 0.26 | 0.73 | 12 | empty |
| 3 | 54 | 0.25 | 0.72 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 574 Ų buried · 11 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3PES · Crystal structure of uncharacterized protein from Pseudomonas phage YuA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9J573
- Elsewhere: RCSB PDB 3PES · PDBe 3PES · UniProt A9J573
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