MolNFT v1 · #75030 · protein

Three-dimensional structure of protein A7VV38_9CLOT from clostridium leptum dsm 753, northeast structural genomics consortium target QLR103

3PE5 · Uncharacterized protein: “Three-dimensional structure of protein A7VV38_9CLOT from clostridium leptum dsm 753, northeast structural…”. X-ray diffraction, 6 pockets (best druggability 0.90). MolNFT v1 #75030 on GenesisL1: 3D…

PDB: 3PE5
Type: protein
Length: 556 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A7VV38
Pockets: 6 · best druggability 0.90

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	278	44% helix, 27% strand	A7VV38

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1089	0.90	0.91	82	empty
2	61	0.51	0.86	18	empty
3	65	0.35	0.77	15	empty
4	71	0.31	0.74	18	empty
5	53	0.30	0.76	12	empty

Interfaces

1 interface between chains.

A–B · 523 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 24 modified (engineered).

Compared structures

3PE5 · Three-dimensional Structure of protein A7VV38_9CLOT from Clostridium leptum DSM 753… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7VV38
Elsewhere: RCSB PDB 3PE5 · PDBe 3PE5 · UniProt A7VV38

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