MolNFT v1 · #74872 · protein
Crystal structure of the TSG101 uev domain in complex with FA258 peptide
3P9H · Tumor susceptibility gene 101 protein: “Crystal structure of the TSG101 uev domain in complex with FA258 peptide”. X-ray diffraction, 2 ligands (ACE, NH2). MolNFT v1 #74872 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3P9H
- Type
- protein
- Length
- 150 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tumor susceptibility gene 101 protein; Gag polyprotein
- UniProt
- Q99816, Q9YP46
- Ligands
- ACE, NH2
Structure
x-ray diffraction · 2 distinct chains · 26% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tumor susceptibility gene 101 protein | protein | 141 | 28% helix, 33% strand | Q99816 |
| B | Gag polyprotein | protein | 9 | 0% helix, 11% strand | Q9YP46 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 739 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 covalent, 1 modified (covalent ligand, nonstandard).
Compared structures
- 3P9H · Crystal structure of the TSG101 UEV domain in complex with FA258 peptide · the same entry in another collection · chain A against A, TM-score 1.00
- Q99816 · AlphaFold monomer V2.0 prediction for tumor susceptibility gene 101 protein (Q99816) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q99816
- Every structure of UniProt Q9YP46
- Elsewhere: RCSB PDB 3P9H · PDBe 3P9H · UniProt Q99816 · UniProt Q9YP46
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