MolNFT v1 · #74633 · protein
Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that was annotated as 'hypothetical protein'
3P2N · 3,6-anhydro-alpha-L-galactosidase: “Discovery and structural characterization of a new glycoside hydrolase family abundant in coastal waters that…”. X-ray diffraction, 2 ligands (ZN, CL), 7 pockets (best druggability 0.69). MolNFT…
- PDB
- 3P2N
- Type
- protein
- Length
- 724 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3,6-anhydro-alpha-L-galactosidase
- EC
- 3.2.1.159
- Ligands
- ZN, CL
- Pockets
- 7 · best druggability 0.69
Structure
x-ray diffraction · 2 distinct chains · 6% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3,6-anhydro-alpha-L-galactosidase (EC 3.2.1.159) | protein | 362 | 6% helix, 40% strand | — |
| B | 3,6-anhydro-alpha-L-galactosidase (EC 3.2.1.159) | protein | 362 | 5% helix, 40% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 427 | 0.69 | 0.80 | 30 | empty |
| 2 | 298 | 0.60 | 0.78 | 38 | empty |
| 3 | 331 | 0.59 | 0.77 | 47 | empty |
| 4 | 81 | 0.55 | 0.86 | 22 | empty |
| 5 | 52 | 0.45 | 0.85 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 2511 Ų buried · 47 hydrogen bonds · protein-protein
Compared structures
- 3P2N · Discovery and structural characterization of a new glycoside hydrolase family abundant in… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3P2N · PDBe 3P2N
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