MolNFT v1 · #74573 · protein
Crystal structure of bombyx mori densovirus 1 capsid
3P0S · Capsid protein vp: “Crystal structure of bombyx mori densovirus 1 capsid”. X-ray diffraction, 4 pockets (best druggability 0.71). MolNFT v1 #74573 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3P0S
- Type
- protein
- Length
- 412 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein vp
- UniProt
- Q8V0M6
- Pockets
- 4 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid protein vp | protein | 412 | 9% helix, 35% strand | Q8V0M6 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 634 | 0.71 | 0.79 | 67 | empty |
| 2 | 143 | 0.45 | 0.76 | 28 | empty |
| 3 | 95 | 0.36 | 0.75 | 21 | empty |
| 4 | 66 | 0.29 | 0.73 | 14 | empty |
Compared structures
- 3P0S · Crystal structure of Bombyx mori densovirus 1 capsid · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8V0M6
- Elsewhere: RCSB PDB 3P0S · PDBe 3P0S · UniProt Q8V0M6
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