MolNFT v1 · #74510 · protein

Crystal structure of an imelysin peptidase (BACOVA_03801) from bacteroides ovatus atcc 8483 at 1.25 a resolution

3OYV: “Crystal structure of an imelysin peptidase (BACOVA_03801) from bacteroides ovatus atcc 8483 at 1.25 a…”. X-ray diffraction, 2 ligands (UNL, CL), 1 pocket (best druggability 0.42). MolNFT v1 #74510 on GenesisL1: 3D structure, binding…

PDB: 3OYV
Type: protein
Length: 354 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Imelysin
UniProt: A7M120
Ligands: UNL, CL
Pockets: 1 · best druggability 0.42

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Imelysin	protein	354	70% helix, 2% strand	A7M120

Ligands and binding sites

UNL · Unknown ligand · ligand · chains A
CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.42	0.77	21	GOL

Modifications

Observed in the structure: 4 modified, 1 covalent (engineered, covalent ligand).

Compared structures

3OYV · Crystal structure of an imelysin peptidase (BACOVA_03801) from Bacteroides ovatus ATCC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7M120
Elsewhere: RCSB PDB 3OYV · PDBe 3OYV · UniProt A7M120

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