MolNFT v1 · #74350 · protein

MDR769 HIV-1 protease complexed with TF/PR hepta-peptide

3OU4: “MDR769 HIV-1 protease complexed with TF/PR hepta-peptide”. X-ray diffraction, 1 pocket (best druggability 0.70). MolNFT v1 #74350 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3OU4
Type: protein
Length: 205 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: HIV-1 protease; TF/PR substrate peptide
UniProt: Q000H7, Q9WLL9
Pockets: 1 · best druggability 0.70

Structure

x-ray diffraction · 3 distinct chains · 7% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	HIV-1 protease	protein	99	7% helix, 52% strand	Q000H7
B	HIV-1 protease	protein	99	7% helix, 52% strand	Q000H7
C	TF/PR substrate peptide	protein	7	0% helix, 14% strand	Q9WLL9

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	504	0.70	0.80	46	empty

Interfaces

3 interfaces between chains.

A–B · 1531 Å² buried · 39 hydrogen bonds · protein-protein
B–C · 418 Å² buried · 15 hydrogen bonds · protein-protein
A–C · 337 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

3OU4 · MDR769 HIV-1 protease complexed with TF/PR hepta-peptide · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q000H7
Every structure of UniProt Q9WLL9
Elsewhere: RCSB PDB 3OU4 · PDBe 3OU4 · UniProt Q000H7 · UniProt Q9WLL9

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