MolNFT v1 · #74318 · protein
Escherichia COLI apo-manganese superoxide dismutase
3OT7 · Superoxide dismutase [mn]: “Escherichia COLI apo-manganese superoxide dismutase”. X-ray diffraction, 8 pockets (best druggability 0.55). MolNFT v1 #74318 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3OT7
- Type
- protein
- Length
- 820 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Superoxide dismutase [mn]
- EC
- 1.15.1.1
- UniProt
- P00448
- Pockets
- 8 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 55% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Superoxide dismutase [mn] (EC 1.15.1.1) | protein | 205 | 55% helix, 12% strand | P00448 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 397 | 0.55 | 0.74 | 37 | empty |
| 2 | 321 | 0.55 | 0.75 | 48 | empty |
| 3 | 157 | 0.51 | 0.79 | 20 | empty |
| 4 | 150 | 0.51 | 0.79 | 20 | empty |
| 5 | 169 | 0.51 | 0.78 | 18 | empty |
Interfaces
4 interfaces between chains.
- C–D · 916 Ų buried · 12 hydrogen bonds · protein-protein
- A–B · 902 Ų buried · 11 hydrogen bonds · protein-protein
- A–D · 369 Ų buried · 4 hydrogen bonds · protein-protein
- A–C · 63 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00448
- Elsewhere: RCSB PDB 3OT7 · PDBe 3OT7 · UniProt P00448
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