MolNFT v1 · #74260 · protein

Crystal structure of a sugar-binding protein (BACOVA_04391) from bacteroides ovatus at 2.16 a resolution

3ORJ: “Crystal structure of a sugar-binding protein (BACOVA_04391) from bacteroides ovatus at 2.16 a resolution”. X-ray diffraction, 2 ligands (ZN, CL), 1 pocket (best druggability 0.40). MolNFT v1 #74260 on GenesisL1: 3D structure…

PDB: 3ORJ
Type: protein
Length: 429 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar-binding protein
UniProt: A7M2Q4
Ligands: ZN, CL
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar-binding protein	protein	429	7% helix, 36% strand	A7M2Q4

Ligands and binding sites

ZN · Zinc ion · metal · chains A
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	136	0.40	0.73	24	empty

Modifications

Observed in the structure: 5 modified (engineered).

Compared structures

3ORJ · Crystal structure of a sugar-binding protein (BACOVA_04391) from Bacteroides ovatus at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7M2Q4
Elsewhere: RCSB PDB 3ORJ · PDBe 3ORJ · UniProt A7M2Q4

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