MolNFT v1 · #74039 · protein

Crystal structure of monofoil-4P homo-trimer: de novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly

3OL0: “Crystal structure of monofoil-4P homo-trimer: de novo designed monomer trefoil-fold sub-domain which forms…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #74039 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3OL0
Type: protein
Length: 125 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: De novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly
Ligands: SO4

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	De novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly	protein	43	7% helix, 44% strand	—
B, C	De novo designed monomer trefoil-fold sub-domain which forms homo-trimer assembly	protein	41	7% helix, 46% strand	—

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A, C, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

A–B · 780 Å² buried · 14 hydrogen bonds · protein-protein
A–C · 772 Å² buried · 11 hydrogen bonds · protein-protein
B–C · 749 Å² buried · 12 hydrogen bonds · protein-protein

Compared structures

3OL0 · Crystal structure of Monofoil-4P homo-trimer: de novo designed monomer trefoil-fold… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3OL0 · PDBe 3OL0

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