MolNFT v1 · #73938 · protein
Crystal structure of the fimd translocation domain
3OHN · Outer membrane usher protein fimd: “Crystal structure of the fimd translocation domain”. X-ray diffraction, 11 pockets (best druggability 0.84). MolNFT v1 #73938 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3OHN
- Type
- protein
- Length
- 931 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane usher protein fimd
- UniProt
- C8U0R5
- Pockets
- 11 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 1% helix, 64% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane usher protein fimd | protein | 468 | 1% helix, 65% strand | C8U0R5 |
| B | Outer membrane usher protein fimd | protein | 463 | 1% helix, 64% strand | C8U0R5 |
Pockets
11 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 825 | 0.84 | 0.86 | 70 | empty |
| 2 | 1062 | 0.83 | 0.84 | 98 | empty |
| 3 | 929 | 0.76 | 0.80 | 128 | empty |
| 4 | 941 | 0.76 | 0.79 | 98 | empty |
| 5 | 942 | 0.75 | 0.78 | 74 | empty |
Interfaces
1 interface between chains.
- A–B · 220 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 3OHN · Crystal structure of the FimD translocation domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8U0R5
- Elsewhere: RCSB PDB 3OHN · PDBe 3OHN · UniProt C8U0R5
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