MolNFT v1 · #73910 · protein

Structure of COI1-ASK1 in complex with coronatine and the JAZ1 degron

3OGM · SKP1-like protein 1A: “Structure of COI1-ASK1 in complex with coronatine and the JAZ1 degron”. X-ray diffraction, 2 ligands (OGK, PO4), 20 pockets (best druggability 0.80). MolNFT v1 #73910 on GenesisL1: 3D structure, binding sites…

PDB: 3OGM
Type: protein
Length: 5,816 residues
Chains: 23
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SKP1-like protein 1A; Coronatine-insensitive protein 1; JAZ1 degron peptide
UniProt: Q39255, O04197, Q3ED96
Ligands: OGK, PO4
Pockets: 20 · best druggability 0.80

Structure

x-ray diffraction · 4 distinct chains · 36% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, C, E, G, I, K, M, O	SKP1-like protein 1A	protein	144	57% helix, 6% strand	Q39255
B, D, F, J, L, N, P	Coronatine-insensitive protein 1	protein	568	35% helix, 19% strand	O04197
Q, R, S, U, V, W, X	JAZ1 degron peptide	protein	18	44% helix, 0% strand	Q3ED96
H	Coronatine-insensitive protein 1	protein	562	31% helix, 19% strand	O04197

Ligands and binding sites

OGK · (1S,2S)-2-ethyl-1-({[(3aS,4S,6R,7aS)-6-ethyl-1-oxooctahydro-1H-inden-4-yl]carbonyl}amino)cyclopropanecarboxylic acid · ligand · 8 copies · chains B, Q, D, R, F, S, H, J, U, L, V, N, W, P, X
PO4 · Phosphate ion · ion · 32 copies · chains B, Q, D, R, F, S, H, J, U, L, V, N, W, P, X

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	159	0.80	0.96	25	OGK
2	157	0.80	0.96	25	OGK
3	152	0.80	0.96	24	OGK
4	157	0.80	0.96	25	OGK
5	154	0.80	0.96	25	OGK

Interfaces

46 interfaces between chains.

M–N · 2002 Å² buried · 20 hydrogen bonds · protein-protein
O–P · 1954 Å² buried · 22 hydrogen bonds · protein-protein
C–D · 1950 Å² buried · 23 hydrogen bonds · protein-protein
K–L · 1941 Å² buried · 20 hydrogen bonds · protein-protein
I–J · 1936 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

3OGM · Structure of COI1-ASK1 in complex with coronatine and the JAZ1 degron · the same entry in another collection · chain H against H, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q39255
Every structure of UniProt O04197
Every structure of UniProt Q3ED96
Elsewhere: RCSB PDB 3OGM · PDBe 3OGM · UniProt Q39255 · UniProt O04197 · UniProt Q3ED96

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