MolNFT v1 · #73904 · protein

Crystal structure of the receptor binding domain of botulinum neurotoxin D

3OGG · Botulinum neurotoxin type D: “Crystal structure of the receptor binding domain of botulinum neurotoxin D”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #73904 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3OGG
Type: protein
Length: 404 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Botulinum neurotoxin type D
EC: 3.4.24.69
UniProt: P19321
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Botulinum neurotoxin type D (EC 3.4.24.69)	protein	404	7% helix, 44% strand	P19321

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	229	0.73	0.88	35	empty
2	66	0.52	0.86	14	empty
3	66	0.42	0.80	17	empty
4	81	0.33	0.74	16	empty

Compared structures

3OGG · Crystal structure of the receptor binding domain of botulinum neurotoxin D · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P19321
Elsewhere: RCSB PDB 3OGG · PDBe 3OGG · UniProt P19321

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