MolNFT v1 · #73903 · protein
Crystal structure of difoil-4P homo-trimer: de novo designed dimeric trefoil-fold sub-domain which forms homo-trimer assembly
3OGF: “Crystal structure of difoil-4P homo-trimer: de novo designed dimeric trefoil-fold sub-domain which forms…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #73903 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3OGF
- Type
- protein
- Length
- 243 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- De novo designed dimeric trefoil-fold sub-domain which forms homo-trimer assembly
- Ligands
- SO4
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | De novo designed dimeric trefoil-fold sub-domain which forms homo-trimer assembly | protein | 81 | 7% helix, 49% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
2 interfaces between chains.
- A–B · 1373 Ų buried · 21 hydrogen bonds · protein-protein
- B–C · 1338 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 3OGF · Crystal structure of Difoil-4P homo-trimer: de novo designed dimeric trefoil-fold… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 3OGF · PDBe 3OGF
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