MolNFT v1 · #73894 · protein

Crystal structure of bama POTRA45 tandem

3OG5 · Outer membrane protein assembly complex, yaet protein: “Crystal structure of bama POTRA45 tandem”. X-ray diffraction, 4 pockets (best druggability 0.58). MolNFT v1 #73894 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3OG5
Type: protein
Length: 296 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein assembly complex, yaet protein
UniProt: D5CVA9
Pockets: 4 · best druggability 0.58

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein assembly complex, yaet protein	protein	160	26% helix, 36% strand	D5CVA9
B	Outer membrane protein assembly complex, yaet protein	protein	136	27% helix, 29% strand	D5CVA9

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	243	0.58	0.79	36	empty
2	74	0.41	0.79	17	empty
3	87	0.36	0.75	17	empty
4	67	0.30	0.74	14	empty

Interfaces

1 interface between chains.

A–B · 598 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

3OG5 · Crystal Structure of BamA POTRA45 tandem · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D5CVA9
Elsewhere: RCSB PDB 3OG5 · PDBe 3OG5 · UniProt D5CVA9

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