MolNFT v1 · #73879 · protein
Structured domain of caenorhabditis elegans bmy-1
3OFG · BOCA/MESD chaperone for ywtd beta-propeller-EGF protein 1: “Structured domain of caenorhabditis elegans bmy-1”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #73879 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3OFG
- Type
- protein
- Length
- 178 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- BOCA/MESD chaperone for ywtd beta-propeller-EGF protein 1
- UniProt
- Q8IG33
- Ligands
- CL
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | BOCA/MESD chaperone for ywtd beta-propeller-EGF protein 1 | protein | 91 | 32% helix, 29% strand | Q8IG33 |
| B | BOCA/MESD chaperone for ywtd beta-propeller-EGF protein 1 | protein | 87 | 31% helix, 31% strand | Q8IG33 |
Ligands and binding sites
- CL · Chloride ion · ion · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 940 Ų buried · 14 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3OFG · Structured Domain of Caenorhabditis elegans BMY-1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IG33
- Elsewhere: RCSB PDB 3OFG · PDBe 3OFG · UniProt Q8IG33
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