MolNFT v1 · #73325 · protein
The crystal structure of functionally unknown protein from neisseria meningitidis MC58
3NYM · Uncharacterized protein: “The crystal structure of functionally unknown protein from neisseria meningitidis MC58”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #73325 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3NYM
- Type
- protein
- Length
- 247 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q9JS17
- Ligands
- SO4
Structure
x-ray diffraction · 2 distinct chains · 62% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 124 | 61% helix, 3% strand | Q9JS17 |
| B | Uncharacterized protein | protein | 123 | 63% helix, 3% strand | Q9JS17 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
- PEG · Di(hydroxyethyl)ether · additive · 3 copies · chains A, B
- ACT · Acetate ion · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 2107 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 21 modified (methylation, engineered).
Compared structures
- 3NYM · The crystal structure of functionally unknown protein from Neisseria meningitidis MC58 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JS17
- Elsewhere: RCSB PDB 3NYM · PDBe 3NYM · UniProt Q9JS17
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