MolNFT v1 · #73257 · protein

Crystal structure of proline iminopeptidase mycobacterium smegmatis

3NWO: “Crystal structure of proline iminopeptidase mycobacterium smegmatis”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.74). MolNFT v1 #73257 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3NWO
Type: protein
Length: 299 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Proline iminopeptidase
EC: 3.4.11.5
UniProt: A0QVS8
Ligands: MG
Pockets: 1 · best druggability 0.74

Structure

x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proline iminopeptidase (EC 3.4.11.5)	protein	299	48% helix, 16% strand	A0QVS8

Ligands and binding sites

MG · Magnesium ion · metal · chains A
GOL · Glycerol · additive · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	355	0.74	0.85	37	GOL, EDO

Compared structures

3NWO · Crystal structure of Proline iminopeptidase Mycobacterium smegmatis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QVS8
Elsewhere: RCSB PDB 3NWO · PDBe 3NWO · UniProt A0QVS8

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