MolNFT v1 · #73221 · protein
Crystal structure of phosphoglycerate mutase from trypanosoma brucei
3NVL · 2,3-bisphosphoglycerate-independent phosphoglycerate mutase: “Crystal structure of phosphoglycerate mutase from trypanosoma brucei”. X-ray diffraction, 2 ligands (CO, SO4), 4 pockets (best druggability 0.78). MolNFT v1 #73221 on…
- PDB
- 3NVL
- Type
- protein
- Length
- 1,098 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
- EC
- 5.4.2.1
- UniProt
- Q38AH1
- Ligands
- CO, SO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) | protein | 549 | 33% helix, 18% strand | Q38AH1 |
Ligands and binding sites
- CO · Cobalt (II) ion · metal · 4 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 797 | 0.78 | 0.82 | 74 | empty |
| 2 | 893 | 0.76 | 0.79 | 70 | empty |
| 3 | 469 | 0.76 | 0.84 | 34 | empty |
| 4 | 88 | 0.37 | 0.75 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 833 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 3NVL · Crystal Structure of Phosphoglycerate Mutase from Trypanosoma brucei · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38AH1
- Elsewhere: RCSB PDB 3NVL · PDBe 3NVL · UniProt Q38AH1
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