MolNFT v1 · #73088 · protein

Crystal structure of putative transcriptional factor LMO1026 from listeria monocytogenes (fragment 52-321), northeast structural genomics consortium target LMR194

3NRO · LMO1026 protein: “Crystal structure of putative transcriptional factor LMO1026 from listeria monocytogenes (fragment 52-321)…”. X-ray diffraction, 5 pockets (best druggability 0.85). MolNFT v1 #73088 on GenesisL1: 3D structure…

PDB: 3NRO
Type: protein
Length: 472 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: LMO1026 protein
UniProt: Q8Y889
Pockets: 5 · best druggability 0.85

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	LMO1026 protein	protein	235	29% helix, 26% strand	Q8Y889
B	LMO1026 protein	protein	237	35% helix, 25% strand	Q8Y889

Pockets

5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	682	0.85	0.89	67	empty
2	792	0.83	0.86	67	empty
3	92	0.37	0.75	15	empty
4	82	0.35	0.75	16	empty
5	68	0.28	0.73	15	empty

Interfaces

1 interface between chains.

A–B · 147 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 18 modified (engineered).

Compared structures

3NRO · Crystal Structure of putative transcriptional factor Lmo1026 from Listeria monocytogenes… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8Y889
Elsewhere: RCSB PDB 3NRO · PDBe 3NRO · UniProt Q8Y889

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