MolNFT v1 · #72999 · protein
Crystal structure of PD(ALLYL)/APO-E45C/C48A-rhlfr
3NP2 · Ferritin light chain: “Crystal structure of PD(ALLYL)/APO-E45C/C48A-rhlfr”. X-ray diffraction, 4 ligands (PLL, PD, CD), 2 pockets (best druggability 0.39). MolNFT v1 #72999 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 3NP2
- Type
- protein
- Length
- 172 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ferritin light chain
- UniProt
- P02791
- Ligands
- PLL, PD, CD, SO4
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Ferritin light chain | protein | 172 | 73% helix, 0% strand | P02791 |
Ligands and binding sites
- PLL · Palladium(II) allyl complex · ligand · 2 copies · chains X
- PD · Palladium ion · metal · 2 copies · chains X
- CD · Cadmium ion · metal · 2 copies · chains X
- SO4 · Sulfate ion · ion
- EDO · 1,2-ethanediol · additive · 8 copies · chains X
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.39 | 0.78 | 16 | empty |
| 2 | 55 | 0.32 | 0.77 | 18 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02791
- Elsewhere: RCSB PDB 3NP2 · PDBe 3NP2 · UniProt P02791
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