MolNFT v1 · #72907 · protein

Crystal structure of a putative sugar hydrolase (BACOVA_03189) from bacteroides ovatus at 2.40 a resolution

3NMB: “Crystal structure of a putative sugar hydrolase (BACOVA_03189) from bacteroides ovatus at 2.40 a resolution”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.52). MolNFT v1 #72907 on GenesisL1: 3D structure, binding…

PDB: 3NMB
Type: protein
Length: 256 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative sugar hydrolase
UniProt: A7LZB4
Ligands: NA
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 10% helix, 39% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Putative sugar hydrolase	protein	256	10% helix, 39% strand	A7LZB4

Ligands and binding sites

NA · Sodium ion · metal · chains A
EDO · 1,2-ethanediol · additive · 14 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	87	0.52	0.84	28	EDO

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

3NMB · Crystal structure of a putative sugar hydrolase (BACOVA_03189) from Bacteroides ovatus at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7LZB4
Elsewhere: RCSB PDB 3NMB · PDBe 3NMB · UniProt A7LZB4

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