MolNFT v1 · #72813 · protein

D116A mutant of SO1698 protein, an aspartic peptidase from shewanella oneidensis, at PH7.5

3NJL: “D116A mutant of SO1698 protein, an aspartic peptidase from shewanella oneidensis, at PH7.5”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.31). MolNFT v1 #72813 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 3NJL
Type: protein
Length: 119 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Peptidase
UniProt: Q8EGA7
Ligands: MG
Pockets: 1 · best druggability 0.31

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Peptidase	protein	119	0% helix, 54% strand	Q8EGA7

Ligands and binding sites

MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	79	0.31	0.73	16	empty

Compared structures

3NJL · D116A mutant of SO1698 protein, an aspartic peptidase from Shewanella oneidensis, at pH7.5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EGA7
Elsewhere: RCSB PDB 3NJL · PDBe 3NJL · UniProt Q8EGA7

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