MolNFT v1 · #72717 · protein
Crystal structure of anst-D7L1
3NGV · D7 protein: “Crystal structure of anst-D7L1”. X-ray diffraction, 1 ligand (SO4), 3 pockets (best druggability 0.67). MolNFT v1 #72717 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3NGV
- Type
- protein
- Length
- 296 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- D7 protein
- EC
- 5.99.1.2
- UniProt
- Q95NY5
- Ligands
- SO4
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 61% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | D7 protein (EC 5.99.1.2) | protein | 296 | 61% helix, 3% strand | Q95NY5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 250 | 0.67 | 0.83 | 37 | GOL |
| 2 | 306 | 0.52 | 0.74 | 30 | empty |
| 3 | 122 | 0.39 | 0.75 | 24 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 3NGV · Crystal structure of AnSt-D7L1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q95NY5
- Elsewhere: RCSB PDB 3NGV · PDBe 3NGV · UniProt Q95NY5
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