MolNFT v1 · #72643 · protein
1.55A resolution structure of malate dehydrogenase from salinibacter ruber
3NEP: “1.55A resolution structure of malate dehydrogenase from salinibacter ruber”. X-ray diffraction, 5 pockets (best druggability 0.60). MolNFT v1 #72643 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3NEP
- Type
- protein
- Length
- 305 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Malate dehydrogenase
- EC
- 1.1.1.37
- UniProt
- Q2S289
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | Malate dehydrogenase (EC 1.1.1.37) | protein | 305 | 51% helix, 24% strand | Q2S289 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 331 | 0.60 | 0.77 | 39 | empty |
| 2 | 90 | 0.34 | 0.74 | 22 | empty |
| 3 | 72 | 0.32 | 0.75 | 17 | empty |
| 4 | 73 | 0.30 | 0.73 | 17 | empty |
| 5 | 53 | 0.26 | 0.73 | 14 | empty |
Compared structures
- 3NEP · 1.55A resolution structure of malate dehydrogenase from Salinibacter ruber · the same entry in another collection · chain X against X, TM-score 1.00
- Q2S289 · AlphaFold monomer V2.0 prediction for malate dehydrogenase (Q2S289) · a predicted model of the same protein · chain X against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2S289
- Elsewhere: RCSB PDB 3NEP · PDBe 3NEP · UniProt Q2S289
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