MolNFT v1 · #72629 · protein
Crystal structure of peptidyl-tRNA hydrolase from francisella tularensis
3NEA: “Crystal structure of peptidyl-tRNA hydrolase from francisella tularensis”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.39). MolNFT v1 #72629 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3NEA
- Type
- protein
- Length
- 187 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidyl-tRNA hydrolase
- EC
- 3.1.1.29
- UniProt
- Q5NGZ6
- Ligands
- CL
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Peptidyl-tRNA hydrolase (EC 3.1.1.29) | protein | 187 | 40% helix, 22% strand | Q5NGZ6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.39 | 0.76 | 22 | EDO |
Compared structures
- 3NEA · Crystal Structure of Peptidyl-tRNA hydrolase from Francisella tularensis · the same entry in another collection · chain A against A, TM-score 1.00
- Q5NGZ6 · AlphaFold monomer V2.0 prediction for peptidyl-tRNA hydrolase (Q5NGZ6) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5NGZ6
- Elsewhere: RCSB PDB 3NEA · PDBe 3NEA · UniProt Q5NGZ6
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