MolNFT v1 · #72611 · protein

Crystal structure of engineered naja nigricollis toxin alpha

3NDS · Short neurotoxin 1: “Crystal structure of engineered naja nigricollis toxin alpha”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #72611 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3NDS
Type: protein
Length: 62 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Short neurotoxin 1
UniProt: P01426
Ligands: SO4

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Short neurotoxin 1	protein	62	0% helix, 44% strand	P01426

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

3NDS · Crystal structure of engineered Naja Nigricollis toxin alpha · the same entry in another collection · chain A against A, TM-score 1.00
P01426 · AlphaFold monomer V2.0 prediction for short neurotoxin 1 (P01426) · a predicted model of the same protein · chain A against A, TM-score 0.87

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01426
Elsewhere: RCSB PDB 3NDS · PDBe 3NDS · UniProt P01426

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