MolNFT v1 · #72599 · protein

Cleaved antitrypsin with P8-P6 asp

3NDF · Alpha-1-antitrypsin: “Cleaved antitrypsin with P8-P6 asp”. X-ray diffraction. MolNFT v1 #72599 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3NDF
Type: protein
Length: 370 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alpha-1-antitrypsin
UniProt: P01009

Structure

x-ray diffraction · 2 distinct chains · 30% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alpha-1-antitrypsin	protein	336	33% helix, 36% strand	P01009
B	Alpha-1-antitrypsin	protein	34	0% helix, 50% strand	P01009

Interfaces

1 interface between chains.

A–B · 2429 Å² buried · 38 hydrogen bonds · protein-protein

Compared structures

3NDF · Cleaved antitrypsin with P8-P6 Asp · the same entry in another collection · chain A against A, TM-score 1.00
P01009 · AlphaFold monomer V2.0 prediction for alpha-1-antitrypsin (P01009) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01009
Elsewhere: RCSB PDB 3NDF · PDBe 3NDF · UniProt P01009

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