GL1X · GenesisL1 explorer

MolNFT v1 · #72574 · protein

GLNK2 from archaeoglobus fulgidus

3NCP · Nitrogen regulatory protein P-II (glnb-2): “GLNK2 from archaeoglobus fulgidus”. X-ray diffraction, 1 ligand (CL). MolNFT v1 #72574 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
3NCP
Type
protein
Length
414 residues
Chains
4
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Nitrogen regulatory protein P-II (glnb-2)
UniProt
O28527
Ligands
CL

Structure

x-ray diffraction · 4 distinct chains · 24% helix, 32% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ANitrogen regulatory protein P-II (glnb-2)protein11219% helix, 32% strandO28527
BNitrogen regulatory protein P-II (glnb-2)protein10321% helix, 29% strandO28527
CNitrogen regulatory protein P-II (glnb-2)protein10030% helix, 34% strandO28527
DNitrogen regulatory protein P-II (glnb-2)protein9927% helix, 33% strandO28527

Ligands and binding sites

  • CL · Chloride ion · ion · 3 copies · chains B, C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

  • A–C · 58 Ų buried · 0 hydrogen bonds · protein-protein
  • A–B · 20 Ų buried · 0 hydrogen bonds · protein-protein
  • C–D · 18 Ų buried · 0 hydrogen bonds · protein-protein

Compared structures

  • 3NCP · GlnK2 from Archaeoglobus fulgidus · the same entry in another collection · chain D against D, TM-score 1.00
  • O28527 · AlphaFold monomer V2.0 prediction for nitrogen regulatory protein GLNK2 (O28527) · a predicted model of the same protein · chain D against A, TM-score 0.97

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