MolNFT v1 · #72521 · protein
The host outer membrane proteins ompa and ompc are packed at specific sites in the shigella phage SF6 virion as structural components
3NB3 · Outer membrane protein a: “The host outer membrane proteins ompa and ompc are packed at specific sites in the shigella phage SF6 virion…”. Electron microscopy, 5 pockets (best druggability 0.69). MolNFT v1 #72521 on GenesisL1: 3D…
- PDB
- 3NB3
- Type
- protein
- Length
- 757 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein a; Outer membrane protein C
- UniProt
- P0A910, P06996
- Pockets
- 5 · best druggability 0.69
Structure
electron microscopy · 2 distinct chains · 4% helix, 63% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Outer membrane protein a | protein | 137 | 0% helix, 78% strand | P0A910 |
| D | Outer membrane protein C | protein | 346 | 6% helix, 56% strand | P06996 |
Pockets
5 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 895 | 0.69 | 0.75 | 68 | empty |
| 2 | 213 | 0.56 | 0.79 | 25 | empty |
| 3 | 199 | 0.53 | 0.78 | 25 | empty |
| 4 | 188 | 0.52 | 0.78 | 24 | empty |
| 5 | 193 | 0.44 | 0.73 | 33 | empty |
Compared structures
- 3NB3 · The host outer membrane proteins OmpA and OmpC are packed at specific sites in the… · the same entry in another collection · chain A against A, TM-score 1.00
- P06996 · AlphaFold monomer V2.0 prediction for outer membrane porin C (P06996) · a predicted model of the same protein · chain D against A, TM-score 0.99
- P0A910 · AlphaFold monomer V2.0 prediction for outer membrane protein a (P0A910) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0A910
- Every structure of UniProt P06996
- Elsewhere: RCSB PDB 3NB3 · PDBe 3NB3 · UniProt P0A910 · UniProt P06996
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