MolNFT v1 · #72496 · protein

Crystal structure of FAB15 MUT7

3NAC · FAB15 MUT7 light chain: “Crystal structure of FAB15 MUT7”. X-ray diffraction, 1 ligand (ZN), 6 pockets (best druggability 0.56). MolNFT v1 #72496 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3NAC
Type: protein
Length: 439 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: FAB15 MUT7 light chain; FAB15 MUT7 heavy chain
Ligands: ZN
Pockets: 6 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 51% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	FAB15 MUT7 light chain	protein	214	7% helix, 50% strand	—
H	FAB15 MUT7 heavy chain	protein	225	8% helix, 52% strand	—

Ligands and binding sites

ZN · Zinc ion · metal · 7 copies · chains L, H
GOL · Glycerol · additive · 3 copies · chains L, H
ACT · Acetate ion · additive · chains L

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	135	0.56	0.82	24	GOL
2	279	0.50	0.73	40	empty
3	59	0.45	0.83	15	empty
4	67	0.30	0.74	16	empty
5	75	0.29	0.73	15	empty

Interfaces

1 interface between chains.

L–H · 2096 Å² buried · 21 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

3NAC · Crystal structure of Fab15 Mut7 · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 3NAC · PDBe 3NAC

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