MolNFT v1 · #72443 · protein
Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon thermococcus kodakaraensis
3N8T · Alpha-amylase, GH57 family: “Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon thermococcus kodakaraensis”. X-ray diffraction, 6 pockets (best druggability 0.72). MolNFT v1 #72443 on GenesisL1: 3D…
- PDB
- 3N8T
- Type
- protein
- Length
- 550 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Alpha-amylase, GH57 family
- EC
- 2.4.1.18
- UniProt
- Q5JDJ7
- Pockets
- 6 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Alpha-amylase, GH57 family (EC 2.4.1.18) | protein | 550 | 50% helix, 11% strand | Q5JDJ7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 311 | 0.72 | 0.85 | 33 | empty |
| 2 | 163 | 0.53 | 0.79 | 21 | empty |
| 3 | 233 | 0.51 | 0.76 | 24 | empty |
| 4 | 145 | 0.51 | 0.79 | 20 | empty |
| 5 | 145 | 0.46 | 0.77 | 23 | empty |
Compared structures
- 3N8T · Native structure of TK1436, a GH57 branching enzyme from hyperthermophilic archaeon… · the same entry in another collection · chain A against A, TM-score 1.00
- Q5JDJ7 · AlphaFold monomer V2.0 prediction for 1,4-alpha-glucan branching enzyme TK1436 (Q5JDJ7) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5JDJ7
- Elsewhere: RCSB PDB 3N8T · PDBe 3N8T · UniProt Q5JDJ7
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