MolNFT v1 · #72105 · protein

The crystal structure of the hpt domain from the hpt sensor hybrid histidine kinase from shewanella to 1.80A

3MYF · Sensor protein: “The crystal structure of the hpt domain from the hpt sensor hybrid histidine kinase from shewanella to 1.80A”. X-ray diffraction, 1 pocket (best druggability 0.81). MolNFT v1 #72105 on GenesisL1: 3D structure…

PDB: 3MYF
Type: protein
Length: 461 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sensor protein
EC: 2.7.13.3
UniProt: A1RHE3
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · 3 distinct chains · 80% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sensor protein (EC 2.7.13.3)	protein	117	80% helix, 0% strand	A1RHE3
B, C	Sensor protein (EC 2.7.13.3)	protein	114	80% helix, 0% strand	A1RHE3
D	Sensor protein (EC 2.7.13.3)	protein	116	80% helix, 0% strand	A1RHE3

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1173	0.81	0.82	106	empty

Interfaces

5 interfaces between chains.

A–B · 724 Å² buried · 4 hydrogen bonds · protein-protein
C–D · 724 Å² buried · 4 hydrogen bonds · protein-protein
A–C · 313 Å² buried · 4 hydrogen bonds · protein-protein
B–D · 86 Å² buried · 0 hydrogen bonds · protein-protein
A–D · 54 Å² buried · 0 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

3MYF · The Crystal Structure of the HPT domain from the Hpt Sensor Hybrid Histidine Kinase from… · the same entry in another collection · chain D against D, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1RHE3
Elsewhere: RCSB PDB 3MYF · PDBe 3MYF · UniProt A1RHE3

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