MolNFT v1 · #71728 · protein
Crystal structure of streptococcus pneumoniae MTA/SAH nucleosidase in complex with 8-aminoadenine
3MMS · 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase: “Crystal structure of streptococcus pneumoniae MTA/SAH nucleosidase in complex with 8-aminoadenine”. X-ray diffraction, 1 ligand (Q88), 1 pocket (best druggability 0.63).…
- PDB
- 3MMS
- Type
- protein
- Length
- 225 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase
- EC
- 3.2.2.16
- UniProt
- Q8DQ16
- Ligands
- Q88
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-methylthioadenosine / S-adenosylhomocysteine nucleosidase (EC 3.2.2.16) | protein | 225 | 36% helix, 30% strand | Q8DQ16 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.63 | 0.90 | 18 | Q88 |
Compared structures
- 3MMS · Crystal structure of Streptococcus pneumoniae MTA/SAH nucleosidase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DQ16
- Elsewhere: RCSB PDB 3MMS · PDBe 3MMS · UniProt Q8DQ16
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