MolNFT v1 · #71714 · protein
Structure of the dissimilatory sulfite reductase from archaeoglobus fulgidus
3MMC · Sulfite reductase, dissimilatory-type subunit alpha: “Structure of the dissimilatory sulfite reductase from archaeoglobus fulgidus”. X-ray diffraction, 2 ligands (SF4, SRM), 17 pockets (best druggability 0.86). MolNFT v1 #71714 on…
- PDB
- 3MMC
- Type
- protein
- Length
- 1,560 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sulfite reductase, dissimilatory-type subunit alpha; Sulfite reductase…
- EC
- 1.8.99.3
- UniProt
- Q59109, Q59110
- Ligands
- SF4, SRM
- Pockets
- 17 · best druggability 0.86
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Sulfite reductase, dissimilatory-type subunit alpha (EC 1.8.99.3) | protein | 417 | 39% helix, 16% strand | Q59109 |
| B, E | Sulfite reductase, dissimilatory-type subunit beta (EC 1.8.99.3) | protein | 363 | 33% helix, 21% strand | Q59110 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 8 copies · chains A, B, D, E
- SRM · Siroheme · ligand · 4 copies · chains A, B, D, E
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
17 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 432 | 0.86 | 0.94 | 59 | SF4, SRM |
| 2 | 454 | 0.86 | 0.93 | 55 | SF4, SRM |
| 3 | 1035 | 0.81 | 0.82 | 76 | SRM, SF4 |
| 4 | 799 | 0.80 | 0.83 | 64 | SRM, GOL, SF4 |
| 5 | 1163 | 0.76 | 0.79 | 67 | empty |
Interfaces
6 interfaces between chains.
- A–B · 6447 Ų buried · 111 hydrogen bonds · protein-protein
- D–E · 6424 Ų buried · 107 hydrogen bonds · protein-protein
- A–E · 2060 Ų buried · 22 hydrogen bonds · protein-protein
- B–D · 2009 Ų buried · 23 hydrogen bonds · protein-protein
- B–E · 1079 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3MMC · Structure of the dissimilatory sulfite reductase from Archaeoglobus fulgidus · the same entry in another collection · chain E against E, TM-score 1.00
- Q59109 · AlphaFold monomer V2.0 prediction for sulfite reductase, dissimilatory-type subunit alpha… · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q59110 · AlphaFold monomer V2.0 prediction for sulfite reductase, dissimilatory-type subunit beta… · a predicted model of the same protein · chain E against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59109
- Every structure of UniProt Q59110
- Elsewhere: RCSB PDB 3MMC · PDBe 3MMC · UniProt Q59109 · UniProt Q59110
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