MolNFT v1 · #71709 · protein
Dissimilatory sulfite reductase carbon monoxide complex
3MM7 · Sulfite reductase, dissimilatory-type subunit alpha: “Dissimilatory sulfite reductase carbon monoxide complex”. X-ray diffraction, 3 ligands (SF4, SRM, CMO), 16 pockets (best druggability 0.87). MolNFT v1 #71709 on GenesisL1: 3D…
- PDB
- 3MM7
- Type
- protein
- Length
- 1,560 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sulfite reductase, dissimilatory-type subunit alpha; Sulfite reductase…
- EC
- 1.8.99.3
- UniProt
- Q59109, Q59110
- Ligands
- SF4, SRM, CMO
- Pockets
- 16 · best druggability 0.87
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, D | Sulfite reductase, dissimilatory-type subunit alpha (EC 1.8.99.3) | protein | 417 | 39% helix, 16% strand | Q59109 |
| B, E | Sulfite reductase, dissimilatory-type subunit beta (EC 1.8.99.3) | protein | 363 | 34% helix, 21% strand | Q59110 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 8 copies · chains A, B, D, E
- SRM · Siroheme · ligand · 4 copies · chains A, B, D, E
- CMO · Carbon monoxide · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
16 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 474 | 0.87 | 0.94 | 52 | SF4, SRM |
| 2 | 439 | 0.86 | 0.93 | 57 | SF4, SRM |
| 3 | 813 | 0.80 | 0.83 | 63 | SRM, CMO, SF4 |
| 4 | 831 | 0.80 | 0.83 | 61 | SRM, SF4 |
| 5 | 1042 | 0.77 | 0.79 | 105 | empty |
Interfaces
6 interfaces between chains.
- D–E · 6406 Ų buried · 98 hydrogen bonds · protein-protein
- A–B · 6394 Ų buried · 110 hydrogen bonds · protein-protein
- A–E · 2039 Ų buried · 24 hydrogen bonds · protein-protein
- B–D · 2010 Ų buried · 21 hydrogen bonds · protein-protein
- B–E · 1103 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 3MM7 · Dissimilatory sulfite reductase carbon monoxide complex · the same entry in another collection · chain E against E, TM-score 1.00
- Q59109 · AlphaFold monomer V2.0 prediction for sulfite reductase, dissimilatory-type subunit alpha… · a predicted model of the same protein · chain A against A, TM-score 0.97
- Q59110 · AlphaFold monomer V2.0 prediction for sulfite reductase, dissimilatory-type subunit beta… · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q59109
- Every structure of UniProt Q59110
- Elsewhere: RCSB PDB 3MM7 · PDBe 3MM7 · UniProt Q59109 · UniProt Q59110
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