MolNFT v1 · #71515 · protein
Crystal structure of the SACCHAROP_DH_N domain of MJ1480 protein from methanococcus jannaschii. northeast structural genomics consortium target MJR83A.
3MGJ · Uncharacterized protein MJ1480: “Crystal structure of the SACCHAROP_DH_N domain of MJ1480 protein from methanococcus jannaschii. northeast…”. X-ray diffraction, 2 pockets (best druggability 0.56). MolNFT v1 #71515 on GenesisL1: 3D…
- PDB
- 3MGJ
- Type
- protein
- Length
- 183 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein MJ1480
- UniProt
- Q58875
- Pockets
- 2 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein MJ1480 | protein | 97 | 29% helix, 34% strand | Q58875 |
| B | Uncharacterized protein MJ1480 | protein | 86 | 33% helix, 36% strand | Q58875 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 64 | 0.56 | 0.88 | 16 | empty |
| 2 | 62 | 0.37 | 0.79 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 719 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 3MGJ · Crystal structure of the Saccharop_dh_N domain of MJ1480 protein from Methanococcus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58875 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1480 (Q58875) · a predicted model of the same protein · chain B against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58875
- Elsewhere: RCSB PDB 3MGJ · PDBe 3MGJ · UniProt Q58875
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