MolNFT v1 · #71416 · protein
Crystal structure of a putative cyclic nucleotide-binding protein (GMET_1532) from geobacter metallireducens gs-15 at 1.90 a resolution
3MDP · Cyclic nucleotide-binding domain (cnmp-bd) protein: “Crystal structure of a putative cyclic nucleotide-binding protein (GMET_1532) from geobacter metallireducens…”. X-ray diffraction, 1 pocket (best druggability 0.33). MolNFT v1…
- PDB
- 3MDP
- Type
- protein
- Length
- 132 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyclic nucleotide-binding domain (cnmp-bd) protein
- UniProt
- Q39VF8
- Pockets
- 1 · best druggability 0.33
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cyclic nucleotide-binding domain (cnmp-bd) protein | protein | 132 | 36% helix, 30% strand | Q39VF8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 72 | 0.33 | 0.75 | 15 | empty |
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 3MDP · Crystal structure of a Putative Cyclic nucleotide-binding protein (Gmet_1532) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q39VF8
- Elsewhere: RCSB PDB 3MDP · PDBe 3MDP · UniProt Q39VF8
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