MolNFT v1 · #71368 · protein
POTRA1-2 of the periplasmic domain of OMP85 from anabaena
3MC9 · ALR2269 protein: “POTRA1-2 of the periplasmic domain of OMP85 from anabaena”. X-ray diffraction, 4 pockets (best druggability 0.42). MolNFT v1 #71368 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3MC9
- Type
- protein
- Length
- 326 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ALR2269 protein
- UniProt
- Q8YUR6
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ALR2269 protein | protein | 161 | 30% helix, 33% strand | Q8YUR6 |
| B | ALR2269 protein | protein | 165 | 30% helix, 33% strand | Q8YUR6 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 53 | 0.42 | 0.82 | 14 | empty |
| 2 | 52 | 0.32 | 0.78 | 16 | empty |
| 3 | 77 | 0.32 | 0.74 | 17 | empty |
| 4 | 60 | 0.28 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1314 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 3MC9 · POTRA1-2 of the periplasmic domain of Omp85 from Anabaena · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8YUR6
- Elsewhere: RCSB PDB 3MC9 · PDBe 3MC9 · UniProt Q8YUR6
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