MolNFT v1 · #71231 · protein
Crystal structure of phosphopentomutase from streptococcus mutans
3M7V: “Crystal structure of phosphopentomutase from streptococcus mutans”. X-ray diffraction, 1 ligand (MN), 5 pockets (best druggability 0.77). MolNFT v1 #71231 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 3M7V
- Type
- protein
- Length
- 802 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphopentomutase
- EC
- 5.4.2.7
- UniProt
- Q8DTU0
- Ligands
- MN
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Phosphopentomutase (EC 5.4.2.7) | protein | 401 | 34% helix, 20% strand | Q8DTU0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 776 | 0.77 | 0.81 | 84 | empty |
| 2 | 349 | 0.60 | 0.77 | 39 | empty |
| 3 | 339 | 0.59 | 0.77 | 42 | empty |
| 4 | 101 | 0.43 | 0.79 | 19 | empty |
| 5 | 107 | 0.41 | 0.77 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 691 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8DTU0
- Elsewhere: RCSB PDB 3M7V · PDBe 3M7V · UniProt Q8DTU0
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