MolNFT v1 · #71210 · protein

Crystal structure of SARO_0823 (YP_496102.1) a protein of unknown function from novosphingobium aromaticivorans dsm 12444 at 1.22 a resolution

3M7A · Uncharacterized protein: “Crystal structure of SARO_0823 (YP_496102.1) a protein of unknown function from novosphingobium…”. X-ray diffraction, 3 pockets (best druggability 0.44). MolNFT v1 #71210 on GenesisL1: 3D structure, binding…

PDB: 3M7A
Type: protein
Length: 280 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: Q2GA55
Pockets: 3 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 11% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	140	11% helix, 44% strand	Q2GA55

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	64	0.44	0.82	20	empty
2	55	0.39	0.81	19	empty
3	126	0.38	0.74	31	empty

Interfaces

1 interface between chains.

A–B · 422 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

3M7A · Crystal structure of Saro_0823 (YP_496102.1) a protein of unknown function from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q2GA55
Elsewhere: RCSB PDB 3M7A · PDBe 3M7A · UniProt Q2GA55

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