MolNFT v1 · #71188 · protein

Crystal structure of rpff

3M6N · Rpff protein: “Crystal structure of rpff”. X-ray diffraction, 6 pockets (best druggability 0.77). MolNFT v1 #71188 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 3M6N
Type: protein
Length: 796 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rpff protein
UniProt: Q7CLS3
Pockets: 6 · best druggability 0.77

Structure

x-ray diffraction · 3 distinct chains · 53% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rpff protein	protein	264	53% helix, 16% strand	Q7CLS3
B	Rpff protein	protein	268	53% helix, 16% strand	Q7CLS3
C	Rpff protein	protein	264	53% helix, 16% strand	Q7CLS3

Pockets

6 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.77	0.98	28	empty
2	80	0.76	0.98	27	empty
3	947	0.72	0.76	60	empty
4	141	0.69	0.90	16	empty
5	159	0.64	0.86	22	empty

Interfaces

3 interfaces between chains.

B–C · 1015 Å² buried · 15 hydrogen bonds · protein-protein
A–B · 1008 Å² buried · 11 hydrogen bonds · protein-protein
A–C · 1006 Å² buried · 10 hydrogen bonds · protein-protein

Compared structures

3M6N · Crystal structure of RpfF · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7CLS3
Elsewhere: RCSB PDB 3M6N · PDBe 3M6N · UniProt Q7CLS3

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